knitr::opts_chunk$set(
warning = TRUE, # show warnings during codebook generation
message = TRUE, # show messages during codebook generation
error = TRUE, # do not interrupt codebook generation in case of errors,
# usually better for debugging
echo = TRUE # show R code
)
ggplot2::theme_set(ggplot2::theme_bw())
pander::panderOptions("table.split.table", Inf)
We collected the following data.
# omit the following lines, if your missing values are already properly labelled
codebook_data <- detect_missing(codebook_data,
only_labelled = TRUE, # only labelled values are autodetected as
# missing
negative_values_are_missing = FALSE, # negative values are missing values
ninety_nine_problems = TRUE, # 99/999 are missing values, if they
# are more than 5 MAD from the median
)
# If you are not using formr, the codebook package needs to guess which items
# form a scale. The following line finds item aggregates with names like this:
# scale = scale_1 + scale_2R + scale_3R
# identifying these aggregates allows the codebook function to
# automatically compute reliabilities.
# However, it will not reverse items automatically.
codebook_data <- detect_scales(codebook_data)
# Does your dataset have a name that is not reflected in the file name?
# Uncomment the line below and change the name
# metadata(codebook_data)$name <- "My Awesome Dataset"
codebook(codebook_data)
## No missing values.
knitr::asis_output(data_info)
if (exists("name", meta)) {
glue::glue(
"__Dataset name__: {name}",
.envir = meta)
}
Dataset name: codebook_data
cat(description)
The dataset has N=180 rows and 89 columns. 180 rows have no missing values on any column.
Metadata for search engines
meta <- meta[setdiff(names(meta),
c("creator", "datePublished", "identifier",
"url", "citation", "spatialCoverage",
"temporalCoverage", "description", "name"))]
pander::pander(meta)
knitr::asis_output(survey_overview)
if (detailed_variables || detailed_scales) {
knitr::asis_output(paste0(scales_items, sep = "\n\n\n", collapse = "\n\n\n"))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| subject | integer | 0 | 180 | 180 | 15.5 | 8.68 | 1 | 8 | 15.5 | 23 | 30 | ▇▇▆▇▇▆▇▇ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | empty | n_unique | min | max |
|---|---|---|---|---|---|---|---|---|
| activity | character | 0 | 180 | 180 | 0 | 6 | 6 | 18 |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometer-Mean-X | numeric | 0 | 180 | 180 | 0.27 | 0.012 | 0.22 | 0.27 | 0.28 | 0.28 | 0.3 | ▁▁▁▁▂▇▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometer-Mean-Y | numeric | 0 | 180 | 180 | -0.018 | 0.0058 | -0.041 | -0.02 | -0.017 | -0.015 | -0.0013 | ▁▁▂▂▇▃▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometer-Mean-Z | numeric | 0 | 180 | 180 | -0.11 | 0.0096 | -0.15 | -0.11 | -0.11 | -0.1 | -0.075 | ▁▁▁▂▇▃▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometer-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.56 | 0.45 | -1 | -0.98 | -0.75 | -0.2 | 0.63 | ▇▁▁▃▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometer-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.46 | 0.5 | -0.99 | -0.94 | -0.51 | -0.031 | 0.62 | ▇▁▁▁▃▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometer-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.58 | 0.4 | -0.99 | -0.95 | -0.65 | -0.23 | 0.61 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometer-Mean-X | numeric | 0 | 180 | 180 | 0.7 | 0.49 | -0.68 | 0.84 | 0.92 | 0.94 | 0.97 | ▁▁▁▁▁▁▁▇ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometer-Mean-Y | numeric | 0 | 180 | 180 | -0.016 | 0.35 | -0.48 | -0.23 | -0.13 | 0.088 | 0.96 | ▂▇▅▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometer-Mean-Z | numeric | 0 | 180 | 180 | 0.074 | 0.29 | -0.5 | -0.12 | 0.024 | 0.15 | 0.96 | ▁▅▇▆▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometer-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.96 | 0.025 | -1 | -0.98 | -0.97 | -0.95 | -0.83 | ▇▆▅▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometer-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.95 | 0.033 | -0.99 | -0.97 | -0.96 | -0.94 | -0.64 | ▇▅▁▁▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometer-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.94 | 0.04 | -0.99 | -0.96 | -0.95 | -0.92 | -0.61 | ▇▆▂▁▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerk-Mean-X | numeric | 0 | 180 | 180 | 0.079 | 0.013 | 0.043 | 0.074 | 0.076 | 0.083 | 0.13 | ▁▁▇▇▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerk-Mean-Y | numeric | 0 | 180 | 180 | 0.0076 | 0.014 | -0.039 | 0.00047 | 0.0095 | 0.013 | 0.057 | ▁▁▂▆▇▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerk-Mean-Z | numeric | 0 | 180 | 180 | -0.005 | 0.013 | -0.067 | -0.011 | -0.0039 | 0.002 | 0.038 | ▁▁▁▁▇▆▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerk-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.59 | 0.42 | -0.99 | -0.98 | -0.81 | -0.22 | 0.54 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerk-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.57 | 0.43 | -0.99 | -0.97 | -0.78 | -0.15 | 0.36 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerk-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.74 | 0.28 | -0.99 | -0.98 | -0.88 | -0.51 | 0.031 | ▇▁▂▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscope-Mean-X | numeric | 0 | 180 | 180 | -0.032 | 0.054 | -0.21 | -0.047 | -0.029 | -0.017 | 0.19 | ▁▁▂▇▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscope-Mean-Y | numeric | 0 | 180 | 180 | -0.074 | 0.036 | -0.2 | -0.09 | -0.073 | -0.061 | 0.027 | ▁▁▁▃▇▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscope-Mean-Z | numeric | 0 | 180 | 180 | 0.087 | 0.036 | -0.072 | 0.075 | 0.085 | 0.1 | 0.18 | ▁▁▁▁▇▇▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscope-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.69 | 0.29 | -0.99 | -0.97 | -0.79 | -0.44 | 0.27 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscope-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.65 | 0.35 | -0.99 | -0.96 | -0.8 | -0.42 | 0.48 | ▇▁▃▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscope-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.62 | 0.37 | -0.99 | -0.96 | -0.8 | -0.31 | 0.56 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerk-Mean-X | numeric | 0 | 180 | 180 | -0.096 | 0.023 | -0.16 | -0.1 | -0.099 | -0.091 | -0.022 | ▁▁▁▇▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerk-Mean-Y | numeric | 0 | 180 | 180 | -0.043 | 0.0095 | -0.077 | -0.046 | -0.041 | -0.038 | -0.013 | ▁▁▁▂▇▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerk-Mean-Z | numeric | 0 | 180 | 180 | -0.055 | 0.012 | -0.092 | -0.062 | -0.053 | -0.049 | -0.0069 | ▁▁▃▇▃▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerk-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.7 | 0.3 | -1 | -0.98 | -0.84 | -0.46 | 0.18 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerk-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.76 | 0.27 | -1 | -0.98 | -0.89 | -0.59 | 0.3 | ▇▂▂▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerk-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.71 | 0.3 | -1 | -0.98 | -0.86 | -0.47 | 0.19 | ▇▁▂▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerMagnitude-Mean | numeric | 0 | 180 | 180 | -0.5 | 0.47 | -0.99 | -0.96 | -0.48 | -0.092 | 0.64 | ▇▁▁▂▃▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.54 | 0.43 | -0.99 | -0.94 | -0.61 | -0.21 | 0.43 | ▇▁▁▂▂▁▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometerMagnitude-Mean | numeric | 0 | 180 | 180 | -0.5 | 0.47 | -0.99 | -0.96 | -0.48 | -0.092 | 0.64 | ▇▁▁▂▃▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeGravityAccelerometerMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.54 | 0.43 | -0.99 | -0.94 | -0.61 | -0.21 | 0.43 | ▇▁▁▂▂▁▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerkMagnitude-Mean | numeric | 0 | 180 | 180 | -0.61 | 0.4 | -0.99 | -0.98 | -0.82 | -0.25 | 0.43 | ▇▁▁▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyAccelerometerJerkMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.58 | 0.42 | -0.99 | -0.98 | -0.8 | -0.22 | 0.45 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeMagnitude-Mean | numeric | 0 | 180 | 180 | -0.57 | 0.4 | -0.98 | -0.95 | -0.66 | -0.22 | 0.42 | ▇▁▁▂▃▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.63 | 0.34 | -0.98 | -0.95 | -0.74 | -0.36 | 0.3 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerkMagnitude-Mean | numeric | 0 | 180 | 180 | -0.74 | 0.28 | -1 | -0.99 | -0.86 | -0.51 | 0.088 | ▇▁▂▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| timeBodyGyroscopeJerkMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.76 | 0.27 | -1 | -0.98 | -0.88 | -0.58 | 0.25 | ▇▂▃▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-Mean-X | numeric | 0 | 180 | 180 | -0.58 | 0.43 | -1 | -0.98 | -0.77 | -0.22 | 0.54 | ▇▁▁▃▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-Mean-Y | numeric | 0 | 180 | 180 | -0.49 | 0.48 | -0.99 | -0.95 | -0.59 | -0.063 | 0.52 | ▇▁▁▁▃▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-Mean-Z | numeric | 0 | 180 | 180 | -0.63 | 0.36 | -0.99 | -0.96 | -0.72 | -0.32 | 0.28 | ▇▁▁▂▃▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.55 | 0.46 | -1 | -0.98 | -0.75 | -0.2 | 0.66 | ▇▁▁▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.48 | 0.47 | -0.99 | -0.94 | -0.51 | -0.079 | 0.56 | ▇▁▁▁▃▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.58 | 0.39 | -0.99 | -0.95 | -0.64 | -0.27 | 0.69 | ▇▁▂▃▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-meanFreq()-X | numeric | 0 | 180 | 180 | -0.23 | 0.19 | -0.64 | -0.39 | -0.26 | -0.061 | 0.16 | ▁▅▇▆▆▅▆▃ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-meanFreq()-Y | numeric | 0 | 180 | 180 | 0.012 | 0.14 | -0.38 | -0.081 | 0.0079 | 0.086 | 0.47 | ▁▂▅▇▅▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometer-meanFreq()-Z | numeric | 0 | 180 | 180 | 0.044 | 0.19 | -0.52 | -0.036 | 0.066 | 0.18 | 0.4 | ▁▁▂▃▇▇▆▂ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-Mean-X | numeric | 0 | 180 | 180 | -0.61 | 0.4 | -0.99 | -0.98 | -0.81 | -0.28 | 0.47 | ▇▁▁▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-Mean-Y | numeric | 0 | 180 | 180 | -0.59 | 0.41 | -0.99 | -0.97 | -0.78 | -0.2 | 0.28 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-Mean-Z | numeric | 0 | 180 | 180 | -0.71 | 0.3 | -0.99 | -0.98 | -0.87 | -0.47 | 0.16 | ▇▁▂▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.61 | 0.4 | -1 | -0.98 | -0.83 | -0.25 | 0.48 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.57 | 0.43 | -0.99 | -0.97 | -0.79 | -0.17 | 0.35 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.76 | 0.26 | -0.99 | -0.98 | -0.9 | -0.54 | -0.0062 | ▇▁▂▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-meanFreq()-X | numeric | 0 | 180 | 180 | -0.069 | 0.25 | -0.58 | -0.29 | -0.061 | 0.18 | 0.33 | ▁▅▇▃▂▅▇▅ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-meanFreq()-Y | numeric | 0 | 180 | 180 | -0.23 | 0.2 | -0.6 | -0.4 | -0.23 | -0.047 | 0.2 | ▃▇▇▆▅▇▆▂ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerJerk-meanFreq()-Z | numeric | 0 | 180 | 180 | -0.14 | 0.21 | -0.63 | -0.31 | -0.092 | 0.039 | 0.23 | ▁▂▃▃▃▆▇▂ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-Mean-X | numeric | 0 | 180 | 180 | -0.64 | 0.35 | -0.99 | -0.97 | -0.73 | -0.34 | 0.47 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-Mean-Y | numeric | 0 | 180 | 180 | -0.68 | 0.33 | -0.99 | -0.97 | -0.81 | -0.45 | 0.33 | ▇▁▃▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-Mean-Z | numeric | 0 | 180 | 180 | -0.6 | 0.38 | -0.99 | -0.96 | -0.79 | -0.26 | 0.49 | ▇▁▁▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-Std-Deviation-X | numeric | 0 | 180 | 180 | -0.71 | 0.27 | -0.99 | -0.98 | -0.81 | -0.48 | 0.2 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-Std-Deviation-Y | numeric | 0 | 180 | 180 | -0.65 | 0.36 | -0.99 | -0.96 | -0.8 | -0.42 | 0.65 | ▇▁▃▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-Std-Deviation-Z | numeric | 0 | 180 | 180 | -0.66 | 0.34 | -0.99 | -0.96 | -0.82 | -0.39 | 0.52 | ▇▁▃▃▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-meanFreq()-X | numeric | 0 | 180 | 180 | -0.1 | 0.15 | -0.4 | -0.21 | -0.12 | 0.0027 | 0.25 | ▂▆▇▇▆▃▅▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-meanFreq()-Y | numeric | 0 | 180 | 180 | -0.17 | 0.18 | -0.67 | -0.29 | -0.16 | -0.043 | 0.27 | ▁▂▃▅▇▅▃▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyGyroscope-meanFreq()-Z | numeric | 0 | 180 | 180 | -0.057 | 0.17 | -0.51 | -0.15 | -0.051 | 0.042 | 0.38 | ▁▁▃▆▇▃▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerMagnitude-Mean | numeric | 0 | 180 | 180 | -0.54 | 0.45 | -0.99 | -0.96 | -0.67 | -0.16 | 0.59 | ▇▁▁▃▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.62 | 0.35 | -0.99 | -0.95 | -0.65 | -0.37 | 0.18 | ▇▁▁▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyAccelerometerMagnitude-meanFreq() | numeric | 0 | 180 | 180 | 0.076 | 0.14 | -0.31 | -0.015 | 0.081 | 0.17 | 0.44 | ▁▂▅▇▇▆▃▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyAccelerometerJerkMagnitude-Mean | numeric | 0 | 180 | 180 | -0.58 | 0.43 | -0.99 | -0.98 | -0.79 | -0.19 | 0.54 | ▇▁▁▂▂▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyAccelerometerJerkMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.6 | 0.41 | -0.99 | -0.98 | -0.81 | -0.27 | 0.32 | ▇▁▁▂▁▂▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyAccelerometerJerkMagnitude-meanFreq() | numeric | 0 | 180 | 180 | 0.16 | 0.14 | -0.13 | 0.045 | 0.17 | 0.28 | 0.49 | ▂▇▇▇▇▇▅▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyGyroscopeMagnitude-Mean | numeric | 0 | 180 | 180 | -0.67 | 0.32 | -0.99 | -0.96 | -0.77 | -0.41 | 0.2 | ▇▁▂▂▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyGyroscopeMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.67 | 0.29 | -0.98 | -0.95 | -0.77 | -0.43 | 0.24 | ▇▁▂▃▂▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyGyroscopeMagnitude-meanFreq() | numeric | 0 | 180 | 180 | -0.036 | 0.18 | -0.46 | -0.17 | -0.054 | 0.082 | 0.41 | ▁▃▇▇▆▅▃▂ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyGyroscopeJerkMagnitude-Mean | numeric | 0 | 180 | 180 | -0.76 | 0.26 | -1 | -0.98 | -0.88 | -0.58 | 0.15 | ▇▂▃▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyGyroscopeJerkMagnitude-Std-Deviation | numeric | 0 | 180 | 180 | -0.77 | 0.25 | -1 | -0.98 | -0.89 | -0.61 | 0.29 | ▇▂▃▂▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| frequencyBodyBodyGyroscopeJerkMagnitude-meanFreq() | numeric | 0 | 180 | 180 | 0.13 | 0.11 | -0.18 | 0.054 | 0.11 | 0.21 | 0.43 | ▁▁▃▇▅▆▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(tBodyAccelerometerMean,gravity) | numeric | 0 | 180 | 180 | 0.0066 | 0.04 | -0.16 | -0.011 | 0.0079 | 0.024 | 0.13 | ▁▁▁▂▇▃▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(tBodyAccelerometerJerkMean),gravityMean) | numeric | 0 | 180 | 180 | 0.00064 | 0.043 | -0.12 | -0.021 | 0.0031 | 0.022 | 0.2 | ▁▂▆▇▁▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(tBodyGyroscopeMean,gravityMean) | numeric | 0 | 180 | 180 | 0.022 | 0.14 | -0.39 | -0.02 | 0.021 | 0.065 | 0.44 | ▁▁▁▇▇▁▁▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(tBodyGyroscopeJerkMean,gravityMean) | numeric | 0 | 180 | 180 | -0.011 | 0.073 | -0.22 | -0.056 | -0.016 | 0.032 | 0.18 | ▁▁▃▇▆▅▂▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(X,gravityMean) | numeric | 0 | 180 | 180 | -0.52 | 0.48 | -0.95 | -0.79 | -0.74 | -0.58 | 0.74 | ▇▅▁▁▁▁▁▂ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(Y,gravityMean) | numeric | 0 | 180 | 180 | 0.079 | 0.28 | -0.87 | 0.022 | 0.17 | 0.24 | 0.42 | ▁▁▁▁▁▂▇▃ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| angle(Z,gravityMean) | numeric | 0 | 180 | 180 | -0.04 | 0.23 | -0.87 | -0.084 | 0.0051 | 0.11 | 0.39 | ▁▁▁▁▂▇▅▁ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
show_missing_values <- FALSE
if (has_labels(item)) {
missing_values <- item[is.na(haven::zap_missing(item))]
attributes(missing_values) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missing_values)$labels <- attributes(missing_values)$labels[is.na(attributes(missing_values)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.double(item)) {
show_missing_values <- length(unique(haven::na_tag(missing_values))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
any(stringr::str_detect(item_nomiss, stringr::fixed(", "))) &&
!is.null(item_info) &&
(exists("type", item_info) &&
any(stringr::str_detect(item_info$type,
pattern = stringr::fixed("multiple"))))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is_numeric_or_time_var(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
if(could_disclose_unique_values(item_nomiss) && is.character(item_nomiss)) {
new_height <- old_height
}
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (!could_disclose_unique_values(item_nomiss)) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
if (is.character(item_nomiss)) {
char_count <- stringr::str_count(item_nomiss)
attributes(char_count)$label <- item_label
plot_labelled(char_count,
item_name, wrap_at, FALSE, trans = "log1p", "characters")
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}
}
knitr::opts_chunk$set(fig.height = old_height)
0 missing values.
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| name | data_type | missing | complete | n | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Training_labels | integer | 0 | 180 | 180 | 3.5 | 1.71 | 1 | 2 | 3.5 | 5 | 6 | ▇▇▁▇▇▁▇▇ |
if (show_missing_values) {
plot_labelled(missing_values, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
missingness_report
if (length(md_pattern)) {
if (knitr::is_html_output()) {
rmarkdown::paged_table(md_pattern, options = list(rows.print = 10))
} else {
knitr::kable(md_pattern)
}
}
items
export_table(metadata_table)
jsonld
JSON-LD metadata
The following JSON-LD can be found by search engines, if you share this codebook publicly on the web.
{
"name": "codebook_data",
"datePublished": "2020-10-11",
"description": "The dataset has N=180 rows and 89 columns.\n180 rows have no missing values on any column.\n\n\n## Table of variables\nThis table contains variable names, labels, their central tendencies and other attributes.\n\n|name |data_type |missing |complete |n |empty |n_unique |min |max |mean |sd |p0 |p25 |p50 |p75 |p100 |hist |\n|:---------------------------------------------------------|:---------|:-------|:--------|:---|:-----|:--------|:---|:---|:-------|:------|:------|:-------|:-------|:------|:-------|:--------|\n|subject |integer |0 |180 |180 |NA |NA |NA |NA |15.5 |8.68 |1 |8 |15.5 |23 |30 |▇▇▆▇▇▆▇▇ |\n|activity |character |0 |180 |180 |0 |6 |6 |18 |NA |NA |NA |NA |NA |NA |NA |NA |\n|timeBodyAccelerometer-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |0.27 |0.012 |0.22 |0.27 |0.28 |0.28 |0.3 |▁▁▁▁▂▇▂▁ |\n|timeBodyAccelerometer-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.018 |0.0058 |-0.041 |-0.02 |-0.017 |-0.015 |-0.0013 |▁▁▂▂▇▃▁▁ |\n|timeBodyAccelerometer-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.11 |0.0096 |-0.15 |-0.11 |-0.11 |-0.1 |-0.075 |▁▁▁▂▇▃▁▁ |\n|timeBodyAccelerometer-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.56 |0.45 |-1 |-0.98 |-0.75 |-0.2 |0.63 |▇▁▁▃▂▂▁▁ |\n|timeBodyAccelerometer-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.46 |0.5 |-0.99 |-0.94 |-0.51 |-0.031 |0.62 |▇▁▁▁▃▂▁▁ |\n|timeBodyAccelerometer-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.58 |0.4 |-0.99 |-0.95 |-0.65 |-0.23 |0.61 |▇▁▂▃▂▁▁▁ |\n|timeGravityAccelerometer-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |0.7 |0.49 |-0.68 |0.84 |0.92 |0.94 |0.97 |▁▁▁▁▁▁▁▇ |\n|timeGravityAccelerometer-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.016 |0.35 |-0.48 |-0.23 |-0.13 |0.088 |0.96 |▂▇▅▂▁▁▁▁ |\n|timeGravityAccelerometer-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |0.074 |0.29 |-0.5 |-0.12 |0.024 |0.15 |0.96 |▁▅▇▆▁▁▁▁ |\n|timeGravityAccelerometer-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.96 |0.025 |-1 |-0.98 |-0.97 |-0.95 |-0.83 |▇▆▅▂▁▁▁▁ |\n|timeGravityAccelerometer-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.95 |0.033 |-0.99 |-0.97 |-0.96 |-0.94 |-0.64 |▇▅▁▁▁▁▁▁ |\n|timeGravityAccelerometer-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.94 |0.04 |-0.99 |-0.96 |-0.95 |-0.92 |-0.61 |▇▆▂▁▁▁▁▁ |\n|timeBodyAccelerometerJerk-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |0.079 |0.013 |0.043 |0.074 |0.076 |0.083 |0.13 |▁▁▇▇▂▁▁▁ |\n|timeBodyAccelerometerJerk-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |0.0076 |0.014 |-0.039 |0.00047 |0.0095 |0.013 |0.057 |▁▁▂▆▇▂▁▁ |\n|timeBodyAccelerometerJerk-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.005 |0.013 |-0.067 |-0.011 |-0.0039 |0.002 |0.038 |▁▁▁▁▇▆▁▁ |\n|timeBodyAccelerometerJerk-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.59 |0.42 |-0.99 |-0.98 |-0.81 |-0.22 |0.54 |▇▁▁▂▂▂▁▁ |\n|timeBodyAccelerometerJerk-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.57 |0.43 |-0.99 |-0.97 |-0.78 |-0.15 |0.36 |▇▁▁▂▂▂▁▁ |\n|timeBodyAccelerometerJerk-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.74 |0.28 |-0.99 |-0.98 |-0.88 |-0.51 |0.031 |▇▁▂▂▂▁▁▁ |\n|timeBodyGyroscope-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.032 |0.054 |-0.21 |-0.047 |-0.029 |-0.017 |0.19 |▁▁▂▇▁▁▁▁ |\n|timeBodyGyroscope-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.074 |0.036 |-0.2 |-0.09 |-0.073 |-0.061 |0.027 |▁▁▁▃▇▂▁▁ |\n|timeBodyGyroscope-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |0.087 |0.036 |-0.072 |0.075 |0.085 |0.1 |0.18 |▁▁▁▁▇▇▂▁ |\n|timeBodyGyroscope-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.69 |0.29 |-0.99 |-0.97 |-0.79 |-0.44 |0.27 |▇▁▂▃▂▁▁▁ |\n|timeBodyGyroscope-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.65 |0.35 |-0.99 |-0.96 |-0.8 |-0.42 |0.48 |▇▁▃▂▁▁▁▁ |\n|timeBodyGyroscope-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.62 |0.37 |-0.99 |-0.96 |-0.8 |-0.31 |0.56 |▇▁▂▃▂▁▁▁ |\n|timeBodyGyroscopeJerk-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.096 |0.023 |-0.16 |-0.1 |-0.099 |-0.091 |-0.022 |▁▁▁▇▁▁▁▁ |\n|timeBodyGyroscopeJerk-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.043 |0.0095 |-0.077 |-0.046 |-0.041 |-0.038 |-0.013 |▁▁▁▂▇▂▁▁ |\n|timeBodyGyroscopeJerk-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.055 |0.012 |-0.092 |-0.062 |-0.053 |-0.049 |-0.0069 |▁▁▃▇▃▁▁▁ |\n|timeBodyGyroscopeJerk-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.7 |0.3 |-1 |-0.98 |-0.84 |-0.46 |0.18 |▇▁▂▃▂▁▁▁ |\n|timeBodyGyroscopeJerk-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.76 |0.27 |-1 |-0.98 |-0.89 |-0.59 |0.3 |▇▂▂▂▁▁▁▁ |\n|timeBodyGyroscopeJerk-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.71 |0.3 |-1 |-0.98 |-0.86 |-0.47 |0.19 |▇▁▂▂▂▁▁▁ |\n|timeBodyAccelerometerMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.5 |0.47 |-0.99 |-0.96 |-0.48 |-0.092 |0.64 |▇▁▁▂▃▂▁▁ |\n|timeBodyAccelerometerMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.54 |0.43 |-0.99 |-0.94 |-0.61 |-0.21 |0.43 |▇▁▁▂▂▁▂▁ |\n|timeGravityAccelerometerMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.5 |0.47 |-0.99 |-0.96 |-0.48 |-0.092 |0.64 |▇▁▁▂▃▂▁▁ |\n|timeGravityAccelerometerMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.54 |0.43 |-0.99 |-0.94 |-0.61 |-0.21 |0.43 |▇▁▁▂▂▁▂▁ |\n|timeBodyAccelerometerJerkMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.61 |0.4 |-0.99 |-0.98 |-0.82 |-0.25 |0.43 |▇▁▁▂▂▁▁▁ |\n|timeBodyAccelerometerJerkMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.58 |0.42 |-0.99 |-0.98 |-0.8 |-0.22 |0.45 |▇▁▁▂▂▂▁▁ |\n|timeBodyGyroscopeMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.57 |0.4 |-0.98 |-0.95 |-0.66 |-0.22 |0.42 |▇▁▁▂▃▁▁▁ |\n|timeBodyGyroscopeMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.63 |0.34 |-0.98 |-0.95 |-0.74 |-0.36 |0.3 |▇▁▂▃▂▁▁▁ |\n|timeBodyGyroscopeJerkMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.74 |0.28 |-1 |-0.99 |-0.86 |-0.51 |0.088 |▇▁▂▂▂▁▁▁ |\n|timeBodyGyroscopeJerkMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.76 |0.27 |-1 |-0.98 |-0.88 |-0.58 |0.25 |▇▂▃▂▁▁▁▁ |\n|frequencyBodyAccelerometer-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.58 |0.43 |-1 |-0.98 |-0.77 |-0.22 |0.54 |▇▁▁▃▂▂▁▁ |\n|frequencyBodyAccelerometer-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.49 |0.48 |-0.99 |-0.95 |-0.59 |-0.063 |0.52 |▇▁▁▁▃▂▁▁ |\n|frequencyBodyAccelerometer-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.63 |0.36 |-0.99 |-0.96 |-0.72 |-0.32 |0.28 |▇▁▁▂▃▁▁▁ |\n|frequencyBodyAccelerometer-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.55 |0.46 |-1 |-0.98 |-0.75 |-0.2 |0.66 |▇▁▁▃▂▁▁▁ |\n|frequencyBodyAccelerometer-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.48 |0.47 |-0.99 |-0.94 |-0.51 |-0.079 |0.56 |▇▁▁▁▃▂▁▁ |\n|frequencyBodyAccelerometer-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.58 |0.39 |-0.99 |-0.95 |-0.64 |-0.27 |0.69 |▇▁▂▃▁▁▁▁ |\n|frequencyBodyAccelerometer-meanFreq()-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.23 |0.19 |-0.64 |-0.39 |-0.26 |-0.061 |0.16 |▁▅▇▆▆▅▆▃ |\n|frequencyBodyAccelerometer-meanFreq()-Y |numeric |0 |180 |180 |NA |NA |NA |NA |0.012 |0.14 |-0.38 |-0.081 |0.0079 |0.086 |0.47 |▁▂▅▇▅▂▁▁ |\n|frequencyBodyAccelerometer-meanFreq()-Z |numeric |0 |180 |180 |NA |NA |NA |NA |0.044 |0.19 |-0.52 |-0.036 |0.066 |0.18 |0.4 |▁▁▂▃▇▇▆▂ |\n|frequencyBodyAccelerometerJerk-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.61 |0.4 |-0.99 |-0.98 |-0.81 |-0.28 |0.47 |▇▁▁▂▂▁▁▁ |\n|frequencyBodyAccelerometerJerk-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.59 |0.41 |-0.99 |-0.97 |-0.78 |-0.2 |0.28 |▇▁▁▂▂▂▁▁ |\n|frequencyBodyAccelerometerJerk-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.71 |0.3 |-0.99 |-0.98 |-0.87 |-0.47 |0.16 |▇▁▂▂▂▁▁▁ |\n|frequencyBodyAccelerometerJerk-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.61 |0.4 |-1 |-0.98 |-0.83 |-0.25 |0.48 |▇▁▁▂▂▂▁▁ |\n|frequencyBodyAccelerometerJerk-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.57 |0.43 |-0.99 |-0.97 |-0.79 |-0.17 |0.35 |▇▁▁▂▂▂▁▁ |\n|frequencyBodyAccelerometerJerk-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.76 |0.26 |-0.99 |-0.98 |-0.9 |-0.54 |-0.0062 |▇▁▂▂▂▁▁▁ |\n|frequencyBodyAccelerometerJerk-meanFreq()-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.069 |0.25 |-0.58 |-0.29 |-0.061 |0.18 |0.33 |▁▅▇▃▂▅▇▅ |\n|frequencyBodyAccelerometerJerk-meanFreq()-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.23 |0.2 |-0.6 |-0.4 |-0.23 |-0.047 |0.2 |▃▇▇▆▅▇▆▂ |\n|frequencyBodyAccelerometerJerk-meanFreq()-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.14 |0.21 |-0.63 |-0.31 |-0.092 |0.039 |0.23 |▁▂▃▃▃▆▇▂ |\n|frequencyBodyGyroscope-Mean-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.64 |0.35 |-0.99 |-0.97 |-0.73 |-0.34 |0.47 |▇▁▂▃▂▁▁▁ |\n|frequencyBodyGyroscope-Mean-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.68 |0.33 |-0.99 |-0.97 |-0.81 |-0.45 |0.33 |▇▁▃▂▁▁▁▁ |\n|frequencyBodyGyroscope-Mean-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.6 |0.38 |-0.99 |-0.96 |-0.79 |-0.26 |0.49 |▇▁▁▃▂▁▁▁ |\n|frequencyBodyGyroscope-Std-Deviation-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.71 |0.27 |-0.99 |-0.98 |-0.81 |-0.48 |0.2 |▇▁▂▃▂▁▁▁ |\n|frequencyBodyGyroscope-Std-Deviation-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.65 |0.36 |-0.99 |-0.96 |-0.8 |-0.42 |0.65 |▇▁▃▂▁▁▁▁ |\n|frequencyBodyGyroscope-Std-Deviation-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.66 |0.34 |-0.99 |-0.96 |-0.82 |-0.39 |0.52 |▇▁▃▃▁▁▁▁ |\n|frequencyBodyGyroscope-meanFreq()-X |numeric |0 |180 |180 |NA |NA |NA |NA |-0.1 |0.15 |-0.4 |-0.21 |-0.12 |0.0027 |0.25 |▂▆▇▇▆▃▅▁ |\n|frequencyBodyGyroscope-meanFreq()-Y |numeric |0 |180 |180 |NA |NA |NA |NA |-0.17 |0.18 |-0.67 |-0.29 |-0.16 |-0.043 |0.27 |▁▂▃▅▇▅▃▁ |\n|frequencyBodyGyroscope-meanFreq()-Z |numeric |0 |180 |180 |NA |NA |NA |NA |-0.057 |0.17 |-0.51 |-0.15 |-0.051 |0.042 |0.38 |▁▁▃▆▇▃▂▁ |\n|frequencyBodyAccelerometerMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.54 |0.45 |-0.99 |-0.96 |-0.67 |-0.16 |0.59 |▇▁▁▃▂▂▁▁ |\n|frequencyBodyAccelerometerMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.62 |0.35 |-0.99 |-0.95 |-0.65 |-0.37 |0.18 |▇▁▁▂▂▁▁▁ |\n|frequencyBodyAccelerometerMagnitude-meanFreq() |numeric |0 |180 |180 |NA |NA |NA |NA |0.076 |0.14 |-0.31 |-0.015 |0.081 |0.17 |0.44 |▁▂▅▇▇▆▃▁ |\n|frequencyBodyBodyAccelerometerJerkMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.58 |0.43 |-0.99 |-0.98 |-0.79 |-0.19 |0.54 |▇▁▁▂▂▂▁▁ |\n|frequencyBodyBodyAccelerometerJerkMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.6 |0.41 |-0.99 |-0.98 |-0.81 |-0.27 |0.32 |▇▁▁▂▁▂▁▁ |\n|frequencyBodyBodyAccelerometerJerkMagnitude-meanFreq() |numeric |0 |180 |180 |NA |NA |NA |NA |0.16 |0.14 |-0.13 |0.045 |0.17 |0.28 |0.49 |▂▇▇▇▇▇▅▁ |\n|frequencyBodyBodyGyroscopeMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.67 |0.32 |-0.99 |-0.96 |-0.77 |-0.41 |0.2 |▇▁▂▂▂▁▁▁ |\n|frequencyBodyBodyGyroscopeMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.67 |0.29 |-0.98 |-0.95 |-0.77 |-0.43 |0.24 |▇▁▂▃▂▁▁▁ |\n|frequencyBodyBodyGyroscopeMagnitude-meanFreq() |numeric |0 |180 |180 |NA |NA |NA |NA |-0.036 |0.18 |-0.46 |-0.17 |-0.054 |0.082 |0.41 |▁▃▇▇▆▅▃▂ |\n|frequencyBodyBodyGyroscopeJerkMagnitude-Mean |numeric |0 |180 |180 |NA |NA |NA |NA |-0.76 |0.26 |-1 |-0.98 |-0.88 |-0.58 |0.15 |▇▂▃▂▁▁▁▁ |\n|frequencyBodyBodyGyroscopeJerkMagnitude-Std-Deviation |numeric |0 |180 |180 |NA |NA |NA |NA |-0.77 |0.25 |-1 |-0.98 |-0.89 |-0.61 |0.29 |▇▂▃▂▁▁▁▁ |\n|frequencyBodyBodyGyroscopeJerkMagnitude-meanFreq() |numeric |0 |180 |180 |NA |NA |NA |NA |0.13 |0.11 |-0.18 |0.054 |0.11 |0.21 |0.43 |▁▁▃▇▅▆▂▁ |\n|angle(tBodyAccelerometerMean,gravity) |numeric |0 |180 |180 |NA |NA |NA |NA |0.0066 |0.04 |-0.16 |-0.011 |0.0079 |0.024 |0.13 |▁▁▁▂▇▃▁▁ |\n|angle(tBodyAccelerometerJerkMean),gravityMean) |numeric |0 |180 |180 |NA |NA |NA |NA |0.00064 |0.043 |-0.12 |-0.021 |0.0031 |0.022 |0.2 |▁▂▆▇▁▁▁▁ |\n|angle(tBodyGyroscopeMean,gravityMean) |numeric |0 |180 |180 |NA |NA |NA |NA |0.022 |0.14 |-0.39 |-0.02 |0.021 |0.065 |0.44 |▁▁▁▇▇▁▁▁ |\n|angle(tBodyGyroscopeJerkMean,gravityMean) |numeric |0 |180 |180 |NA |NA |NA |NA |-0.011 |0.073 |-0.22 |-0.056 |-0.016 |0.032 |0.18 |▁▁▃▇▆▅▂▁ |\n|angle(X,gravityMean) |numeric |0 |180 |180 |NA |NA |NA |NA |-0.52 |0.48 |-0.95 |-0.79 |-0.74 |-0.58 |0.74 |▇▅▁▁▁▁▁▂ |\n|angle(Y,gravityMean) |numeric |0 |180 |180 |NA |NA |NA |NA |0.079 |0.28 |-0.87 |0.022 |0.17 |0.24 |0.42 |▁▁▁▁▁▂▇▃ |\n|angle(Z,gravityMean) |numeric |0 |180 |180 |NA |NA |NA |NA |-0.04 |0.23 |-0.87 |-0.084 |0.0051 |0.11 |0.39 |▁▁▁▁▂▇▅▁ |\n|Training_labels |integer |0 |180 |180 |NA |NA |NA |NA |3.5 |1.71 |1 |2 |3.5 |5 |6 |▇▇▁▇▇▁▇▇ |\n\n### Note\nThis dataset was automatically described using the [codebook R package](https://rubenarslan.github.io/codebook/) (version 0.8.1).",
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